Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_17666

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1704
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29


Found at i:1207 original size:15 final size:16

Alignment explanation


    Indices: 1187--1217  Score: 55
    Period size: 16  Copynumber: 2.0  Consensus size: 16

       1177 GTGTTTATTG

                            
       1187 AAGCTG-AGGCAAATA
          1 AAGCTGCAGGCAAATA

                            
       1202 AAGCTGCAGGCAAATA
          1 AAGCTGCAGGCAAATA

       1218 TGATAATGCC


Statistics
Matches: 15,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  15    6  0.40
  16    9  0.60

ACGTcount: A:0.45, C:0.16, G:0.26, T:0.13


Consensus pattern (16 bp):   
AAGCTGCAGGCAAATA

Done.