Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_03069

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 426

Length: 711
ACGTcount: A:0.21, C:0.30, G:0.24, T:0.25


Found at i:505 original size:39 final size:39

Alignment explanation


    Indices: 451--591  Score: 210
    Period size: 39  Copynumber: 3.6  Consensus size: 39

        441 CGCCGCCACG

                  *         *                    * 
        451 CCGAGCCCCACCCCGCATGGAACTTCAAGTCCTCCTCGT
          1 CCGAGCGCCACCCCGCCTGGAACTTCAAGTCCTCCTCCT

                            *                      
        490 CCGAGCGCCACCCCGCGTGGAACTTCAAGTCCTCCTCCT
          1 CCGAGCGCCACCCCGCCTGGAACTTCAAGTCCTCCTCCT

              *     *                              
        529 CCAAGCGCTACCCCGCCTGGAACTTCAAGTCCTCCTCCT
          1 CCGAGCGCCACCCCGCCTGGAACTTCAAGTCCTCCTCCT

                     *  *           
        568 CCGAGCGCCGCCACGCCTGGAACT
          1 CCGAGCGCCACCCCGCCTGGAACT

        592 CCGAGCGCCA


Statistics
Matches: 92,  Mismatches: 10, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  39   92  1.00

ACGTcount: A:0.17, C:0.46, G:0.20, T:0.17


Consensus pattern (39 bp):   
CCGAGCGCCACCCCGCCTGGAACTTCAAGTCCTCCTCCT
Done.