Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_04070

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 356

Length: 594
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26


Found at i:314 original size:20 final size:21

Alignment explanation


    Indices: 286--324  Score: 53
    Period size: 21  Copynumber: 1.9  Consensus size: 21

        276 GTGCATGGGT

                *                
        286 GCAATTTC-AGCTTTACAACA
          1 GCAAGTTCAAGCTTTACAACA

                      *        
        306 GCAAGTTCAATCTTTACAA
          1 GCAAGTTCAAGCTTTACAA

        325 GCTGAACTGA


Statistics
Matches: 16,  Mismatches: 2, Indels: 1
        0.84            0.11        0.05

Matches are distributed among these distances:
  20    7  0.44
  21    9  0.56

ACGTcount: A:0.36, C:0.23, G:0.10, T:0.31


Consensus pattern (21 bp):   
GCAAGTTCAAGCTTTACAACA
Done.