Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_23559

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3804
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.29


Found at i:1735 original size:24 final size:24

Alignment explanation


    Indices: 1708--1755  Score: 96
    Period size: 24  Copynumber: 2.0  Consensus size: 24

       1698 CGCTAAGTTC

                                    
       1708 ACCGTTTTAGCTTCAGGGTTCGAG
          1 ACCGTTTTAGCTTCAGGGTTCGAG

                                    
       1732 ACCGTTTTAGCTTCAGGGTTCGAG
          1 ACCGTTTTAGCTTCAGGGTTCGAG

       1756 CTTTTATCGA


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  24   24  1.00

ACGTcount: A:0.17, C:0.21, G:0.29, T:0.33


Consensus pattern (24 bp):   
ACCGTTTTAGCTTCAGGGTTCGAG
Done.