Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_20777

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 419

Length: 699
ACGTcount: A:0.28, C:0.15, G:0.24, T:0.33


Found at i:413 original size:30 final size:30

Alignment explanation


    Indices: 379--437  Score: 100
    Period size: 30  Copynumber: 2.0  Consensus size: 30

        369 CGAGGATGAC

                 *                        
        379 GATATTGATTATGATAATGAGTTGATTGAT
          1 GATATCGATTATGATAATGAGTTGATTGAT

                           *             
        409 GATATCGATTATGATGATGAGTTGATTGA
          1 GATATCGATTATGATAATGAGTTGATTGA

        438 CGAATTATTG


Statistics
Matches: 27,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  30   27  1.00

ACGTcount: A:0.32, C:0.02, G:0.25, T:0.41


Consensus pattern (30 bp):   
GATATCGATTATGATAATGAGTTGATTGAT
Done.