Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_14938

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 612

Length: 1021
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.25


Found at i:294 original size:3 final size:3

Alignment explanation


    Indices: 286--322  Score: 74
    Period size: 3  Copynumber: 12.3  Consensus size: 3

        276 TCCTCAGCCC

                                                             
        286 CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG C
          1 CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG C

        323 TTCTTCAATA


Statistics
Matches: 34,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   34  1.00

ACGTcount: A:0.32, C:0.35, G:0.32, T:0.00


Consensus pattern (3 bp):   
CAG

Done.