Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_40371

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3534
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28


Found at i:1174 original size:30 final size:30

Alignment explanation


    Indices: 1138--1198  Score: 122
    Period size: 30  Copynumber: 2.0  Consensus size: 30

       1128 AGTCAACTCG

                                          
       1138 TACAGGGATGATGGATCTAGAAGAAGGAAT
          1 TACAGGGATGATGGATCTAGAAGAAGGAAT

                                          
       1168 TACAGGGATGATGGATCTAGAAGAAGGAAT
          1 TACAGGGATGATGGATCTAGAAGAAGGAAT

             
       1198 T
          1 T

       1199 CACGAAGACA


Statistics
Matches: 31,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  30   31  1.00

ACGTcount: A:0.39, C:0.07, G:0.33, T:0.21


Consensus pattern (30 bp):   
TACAGGGATGATGGATCTAGAAGAAGGAAT

Done.