Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_32425

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 510

Length: 851
ACGTcount: A:0.34, C:0.17, G:0.27, T:0.22


Found at i:744 original size:26 final size:25

Alignment explanation


    Indices: 701--750  Score: 64
    Period size: 26  Copynumber: 2.0  Consensus size: 25

        691 GAAAAAGGAG

                     *  **            
        701 GAGAAGATGGAAGGGAAGAAGAAAAA
          1 GAGAAGATGAAAAAGAAGAA-AAAAA

                                    
        727 GAGAAGATGAAAAAGAAGAAAAAA
          1 GAGAAGATGAAAAAGAAGAAAAAA

        751 GAAAGGATGG


Statistics
Matches: 21,  Mismatches: 3, Indels: 1
        0.84            0.12        0.04

Matches are distributed among these distances:
  25    4  0.19
  26   17  0.81

ACGTcount: A:0.64, C:0.00, G:0.32, T:0.04


Consensus pattern (25 bp):   
GAGAAGATGAAAAAGAAGAAAAAAA
Done.