Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_16975

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 295

Length: 492
ACGTcount: A:0.28, C:0.26, G:0.23, T:0.23


Found at i:252 original size:6 final size:6

Alignment explanation


    Indices: 241--282  Score: 84
    Period size: 6  Copynumber: 7.0  Consensus size: 6

        231 CATTACCCTT

                                                            
        241 TCTCCA TCTCCA TCTCCA TCTCCA TCTCCA TCTCCA TCTCCA
          1 TCTCCA TCTCCA TCTCCA TCTCCA TCTCCA TCTCCA TCTCCA

        283 ACGATAATAA


Statistics
Matches: 36,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   36  1.00

ACGTcount: A:0.17, C:0.50, G:0.00, T:0.33


Consensus pattern (6 bp):   
TCTCCA

Done.