Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_33579

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 200

Length: 150
ACGTcount: A:0.33, C:0.17, G:0.24, T:0.25


Found at i:122 original size:11 final size:11

Alignment explanation


    Indices: 106--130  Score: 50
    Period size: 11  Copynumber: 2.3  Consensus size: 11

         96 TATTGTTTCT

                       
        106 TCCAATGAAAG
          1 TCCAATGAAAG

                       
        117 TCCAATGAAAG
          1 TCCAATGAAAG

               
        128 TCC
          1 TCC

        131 GTGAAGCCTT


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  11   14  1.00

ACGTcount: A:0.40, C:0.24, G:0.16, T:0.20


Consensus pattern (11 bp):   
TCCAATGAAAG
Done.