Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_22424

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 568

Length: 948
ACGTcount: A:0.28, C:0.20, G:0.32, T:0.20


Found at i:155 original size:6 final size:6

Alignment explanation


    Indices: 140--172  Score: 57
    Period size: 6  Copynumber: 5.5  Consensus size: 6

        130 GGTGATGCTT

                 *                                
        140 CCGCCG CCGCCA CCGCCA CCGCCA CCGCCA CCG
          1 CCGCCA CCGCCA CCGCCA CCGCCA CCGCCA CCG

        173 ACGAATCTTC


Statistics
Matches: 26,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
   6   26  1.00

ACGTcount: A:0.12, C:0.67, G:0.21, T:0.00


Consensus pattern (6 bp):   
CCGCCA

Done.