Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_14461

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3438
ACGTcount: A:0.37, C:0.17, G:0.23, T:0.23


Found at i:1349 original size:18 final size:19

Alignment explanation


    Indices: 1315--1352  Score: 53
    Period size: 18  Copynumber: 2.1  Consensus size: 19

       1305 CGTTGAAGAA

                               
       1315 ATGAGACAAGAGCTGAATT
          1 ATGAGACAAGAGCTGAATT

                                
       1334 ATGAGA-AAGA-CATGAATT
          1 ATGAGACAAGAGC-TGAATT

             
       1352 A
          1 A

       1353 CAATCTTCGG


Statistics
Matches: 18,  Mismatches: 0, Indels: 3
        0.86            0.00        0.14

Matches are distributed among these distances:
  17    1  0.06
  18   11  0.61
  19    6  0.33

ACGTcount: A:0.47, C:0.08, G:0.24, T:0.21


Consensus pattern (19 bp):   
ATGAGACAAGAGCTGAATT
Done.