Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_28777

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 702

Length: 1170
ACGTcount: A:0.32, C:0.17, G:0.24, T:0.28


Found at i:187 original size:3 final size:3

Alignment explanation


    Indices: 181--227  Score: 58
    Period size: 3  Copynumber: 15.7  Consensus size: 3

        171 TTTAATAGTC

                                          *   *         *       *         
        181 GAA GAA GAA GAA GAA GAA GAA GAT GAT GAA GAA CAA GAA CAA GAA GA
          1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GA

        228 GGAATTTGAA


Statistics
Matches: 38,  Mismatches: 6, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
   3   38  1.00

ACGTcount: A:0.62, C:0.04, G:0.30, T:0.04


Consensus pattern (3 bp):   
GAA

Done.