Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_40467

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2133
ACGTcount: A:0.32, C:0.20, G:0.23, T:0.24


Found at i:85 original size:21 final size:21

Alignment explanation


    Indices: 59--117  Score: 109
    Period size: 21  Copynumber: 2.8  Consensus size: 21

         49 ACTCGAACCA

                      *          
         59 CCAAATTCGCGCCCAAATCTT
          1 CCAAATTCGCACCCAAATCTT

                                 
         80 CCAAATTCGCACCCAAATCTT
          1 CCAAATTCGCACCCAAATCTT

                             
        101 CCAAATTCGCACCCAAA
          1 CCAAATTCGCACCCAAA

        118 CTCAAACCCA


Statistics
Matches: 37,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  21   37  1.00

ACGTcount: A:0.34, C:0.39, G:0.07, T:0.20


Consensus pattern (21 bp):   
CCAAATTCGCACCCAAATCTT
Done.