Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_19548

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 200

Length: 324
ACGTcount: A:0.29, C:0.21, G:0.27, T:0.23


Found at i:305 original size:24 final size:25

Alignment explanation


    Indices: 272--321  Score: 66
    Period size: 24  Copynumber: 2.0  Consensus size: 25

        262 GGGAAGCCTT

                      *        *     
        272 TGGGACGTGGTCGGGGTCGTGGCCG
          1 TGGGACGTGGACGGGGTCGAGGCCG

                         *           
        297 TGGG-CGTGGACGTGGTCGAGGCCG
          1 TGGGACGTGGACGGGGTCGAGGCCG

             
        321 T
          1 T

        322 TAA


Statistics
Matches: 22,  Mismatches: 3, Indels: 1
        0.85            0.12        0.04

Matches are distributed among these distances:
  24   18  0.82
  25    4  0.18

ACGTcount: A:0.06, C:0.20, G:0.54, T:0.20


Consensus pattern (25 bp):   
TGGGACGTGGACGGGGTCGAGGCCG
Done.