Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_22263

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 423

Length: 705
ACGTcount: A:0.24, C:0.25, G:0.27, T:0.24


Found at i:40 original size:12 final size:12

Alignment explanation


    Indices: 19--51  Score: 57
    Period size: 12  Copynumber: 2.8  Consensus size: 12

          9 CTCTTCTAGT

                        
         19 TCATCATCATCC
          1 TCATCATCATCC

                 *      
         31 TCATCCTCATCC
          1 TCATCATCATCC

                     
         43 TCATCATCA
          1 TCATCATCA

         52 ACCCCACGAC


Statistics
Matches: 19,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  12   19  1.00

ACGTcount: A:0.24, C:0.42, G:0.00, T:0.33


Consensus pattern (12 bp):   
TCATCATCATCC
Done.