Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_09288

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1950
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.26


Found at i:1127 original size:24 final size:24

Alignment explanation


    Indices: 1100--1145  Score: 92
    Period size: 24  Copynumber: 1.9  Consensus size: 24

       1090 CATGGATTTG

                                    
       1100 TTGACTGTCAAGAAAATGGTTCTT
          1 TTGACTGTCAAGAAAATGGTTCTT

                                  
       1124 TTGACTGTCAAGAAAATGGTTC
          1 TTGACTGTCAAGAAAATGGTTC

       1146 AGCTGGTGCC


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  24   22  1.00

ACGTcount: A:0.30, C:0.13, G:0.22, T:0.35


Consensus pattern (24 bp):   
TTGACTGTCAAGAAAATGGTTCTT
Done.