Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_10670

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 518

Length: 864
ACGTcount: A:0.26, C:0.27, G:0.18, T:0.29


Found at i:423 original size:20 final size:20

Alignment explanation


    Indices: 394--431  Score: 58
    Period size: 20  Copynumber: 1.9  Consensus size: 20

        384 GAAAGCTCTT

                        *       
        394 CGATTAGTCTCGTCGGATCC
          1 CGATTAGTCTCGACGGATCC

                 *            
        414 CGATTTGTCTCGACGGAT
          1 CGATTAGTCTCGACGGAT

        432 GTTCTTTCAT


Statistics
Matches: 16,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  20   16  1.00

ACGTcount: A:0.16, C:0.26, G:0.26, T:0.32


Consensus pattern (20 bp):   
CGATTAGTCTCGACGGATCC
Done.