Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_15843

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2025
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.26


Found at i:1828 original size:6 final size:6

Alignment explanation


    Indices: 1810--1845  Score: 63
    Period size: 6  Copynumber: 6.0  Consensus size: 6

       1800 GTTCCGTAAC

                     *                               
       1810 ACCCCA ACACCA ACCCCA ACCCCA ACCCCA ACCCCA
          1 ACCCCA ACCCCA ACCCCA ACCCCA ACCCCA ACCCCA

       1846 TCCAACATCG


Statistics
Matches: 28,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
   6   28  1.00

ACGTcount: A:0.36, C:0.64, G:0.00, T:0.00


Consensus pattern (6 bp):   
ACCCCA

Done.