Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_07942

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 720

Length: 1200
ACGTcount: A:0.33, C:0.19, G:0.25, T:0.23


Found at i:67 original size:21 final size:21

Alignment explanation


    Indices: 41--82  Score: 84
    Period size: 21  Copynumber: 2.0  Consensus size: 21

         31 AGCACCGACG

                                 
         41 GCTCCAGCGAAAAGAAGGCTT
          1 GCTCCAGCGAAAAGAAGGCTT

                                 
         62 GCTCCAGCGAAAAGAAGGCTT
          1 GCTCCAGCGAAAAGAAGGCTT

         83 TGTACGACGA


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   21  1.00

ACGTcount: A:0.33, C:0.24, G:0.29, T:0.14


Consensus pattern (21 bp):   
GCTCCAGCGAAAAGAAGGCTT
Done.