Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_05864

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2661
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26


Found at i:2319 original size:105 final size:105

Alignment explanation


    Indices: 2189--2399  Score: 359
    Period size: 105  Copynumber: 2.0  Consensus size: 105

       2179 ACTTCCAATC

                                                       *           *         
       2189 AGCGAACTTTAGCCCTTTATGATGGCAACGATCCCAGCGTGGAGTCTGAACCCGATGAAACATTG
          1 AGCGAACTTTAGCCCTTTATGATGGCAACGATCCCAGCGTGGAATCTGAACCCGAGGAAACATTG

                                                    
       2254 GCAGCTCTGAAAAGCAAAATGAAACCAAAATCTAAAAGTG
         66 GCAGCTCTGAAAAGCAAAATGAAACCAAAATCTAAAAGTG

                              * *                **                          
       2294 AGCGAACTTTAGCCCTTTGTTATGGCAACGATCCCAGTTTGGAATCTGAACCCGAGGAAACATTG
          1 AGCGAACTTTAGCCCTTTATGATGGCAACGATCCCAGCGTGGAATCTGAACCCGAGGAAACATTG

                                         *          
       2359 GCAGCTCTGAAAAGCAAAATGAAACCAAACTCTAAAAGTG
         66 GCAGCTCTGAAAAGCAAAATGAAACCAAAATCTAAAAGTG

             
       2399 A
          1 A

       2400 CGGTAAGAAG


Statistics
Matches: 99,  Mismatches: 7, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
 105   99  1.00

ACGTcount: A:0.36, C:0.22, G:0.21, T:0.21


Consensus pattern (105 bp):   
AGCGAACTTTAGCCCTTTATGATGGCAACGATCCCAGCGTGGAATCTGAACCCGAGGAAACATTG
GCAGCTCTGAAAAGCAAAATGAAACCAAAATCTAAAAGTG
Done.