Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_18047

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1695
ACGTcount: A:0.31, C:0.21, G:0.24, T:0.24


Found at i:61 original size:12 final size:12

Alignment explanation


    Indices: 44--73  Score: 60
    Period size: 12  Copynumber: 2.5  Consensus size: 12

         34 TCAGTGTTCT

                        
         44 TGGTGGCAGCAG
          1 TGGTGGCAGCAG

                        
         56 TGGTGGCAGCAG
          1 TGGTGGCAGCAG

                  
         68 TGGTGG
          1 TGGTGG

         74 GTGTCACGCA


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   18  1.00

ACGTcount: A:0.13, C:0.13, G:0.53, T:0.20


Consensus pattern (12 bp):   
TGGTGGCAGCAG
Done.