Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_08061

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2043
ACGTcount: A:0.33, C:0.16, G:0.26, T:0.26


Found at i:1570 original size:3 final size:3

Alignment explanation


    Indices: 1543--1584  Score: 57
    Period size: 3  Copynumber: 14.0  Consensus size: 3

       1533 AGCCTCAGAG

                  *           *       *                            
       1543 GAT GAA GAT GAT GAA GAT GAA GAT GAT GAT GAT GAT GAT GAT
          1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT

       1585 AGCGAAGATG


Statistics
Matches: 33,  Mismatches: 6, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
   3   33  1.00

ACGTcount: A:0.40, C:0.00, G:0.33, T:0.26


Consensus pattern (3 bp):   
GAT

Done.