Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_14505

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 241

Length: 402
ACGTcount: A:0.32, C:0.26, G:0.23, T:0.20


Found at i:356 original size:15 final size:15

Alignment explanation


    Indices: 316--356  Score: 55
    Period size: 15  Copynumber: 2.7  Consensus size: 15

        306 CGAAGAAAAT

                 *         
        316 GAAGAAGAAGAGGAA
          1 GAAGAGGAAGAGGAA

               *  *        
        331 GAAAAGAAAGAGGAA
          1 GAAGAGGAAGAGGAA

                       
        346 GAAGAGGAAGA
          1 GAAGAGGAAGA

        357 TCTAGAAAAG


Statistics
Matches: 21,  Mismatches: 5, Indels: 0
        0.81            0.19        0.00

Matches are distributed among these distances:
  15   21  1.00

ACGTcount: A:0.61, C:0.00, G:0.39, T:0.00


Consensus pattern (15 bp):   
GAAGAGGAAGAGGAA
Done.