Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_32510

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 212

Length: 354
ACGTcount: A:0.22, C:0.24, G:0.19, T:0.36


Found at i:143 original size:3 final size:3

Alignment explanation


    Indices: 129--161  Score: 57
    Period size: 3  Copynumber: 11.0  Consensus size: 3

        119 AGTCTCAGTT

                     *                                 
        129 TTC TTC TGC TTC TTC TTC TTC TTC TTC TTC TTC
          1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC

        162 AGTGAAGCGC


Statistics
Matches: 28,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
   3   28  1.00

ACGTcount: A:0.00, C:0.33, G:0.03, T:0.64


Consensus pattern (3 bp):   
TTC

Done.