Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_39752

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 315

Length: 525
ACGTcount: A:0.31, C:0.19, G:0.27, T:0.23


Found at i:367 original size:18 final size:17

Alignment explanation


    Indices: 335--368  Score: 50
    Period size: 18  Copynumber: 1.9  Consensus size: 17

        325 AATACAGGTG

                      *      
        335 ATGGTGATGATGATGGT
          1 ATGGTGATGAGGATGGT

                             
        352 ATGGTGTATGAGGATGG
          1 ATGGTG-ATGAGGATGG

        369 AGATATGGTC


Statistics
Matches: 15,  Mismatches: 1, Indels: 1
        0.88            0.06        0.06

Matches are distributed among these distances:
  17    6  0.40
  18    9  0.60

ACGTcount: A:0.24, C:0.00, G:0.44, T:0.32


Consensus pattern (17 bp):   
ATGGTGATGAGGATGGT
Done.