Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_31770

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 354

Length: 591
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.26


Found at i:29 original size:9 final size:9

Alignment explanation


    Indices: 15--44  Score: 51
    Period size: 9  Copynumber: 3.3  Consensus size: 9

          5 GACAGCCACA

                     
         15 AAGCAAACC
          1 AAGCAAACC

                     
         24 AAGCAAACC
          1 AAGCAAACC

                 *   
         33 AAGCATACC
          1 AAGCAAACC

               
         42 AAG
          1 AAG

         45 GTTTCCTCAA


Statistics
Matches: 20,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
   9   20  1.00

ACGTcount: A:0.53, C:0.30, G:0.13, T:0.03


Consensus pattern (9 bp):   
AAGCAAACC
Done.