Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_04513

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 950

Length: 1584
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28


Found at i:820 original size:3 final size:3

Alignment explanation


    Indices: 812--836  Score: 50
    Period size: 3  Copynumber: 8.3  Consensus size: 3

        802 AGCAATCCAA

                                             
        812 CTT CTT CTT CTT CTT CTT CTT CTT C
          1 CTT CTT CTT CTT CTT CTT CTT CTT C

        837 GTTGCCATCT


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   22  1.00

ACGTcount: A:0.00, C:0.36, G:0.00, T:0.64


Consensus pattern (3 bp):   
CTT

Done.