Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_04298

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 674

Length: 1124
ACGTcount: A:0.26, C:0.20, G:0.22, T:0.32


Found at i:68 original size:18 final size:18

Alignment explanation


    Indices: 45--89  Score: 81
    Period size: 18  Copynumber: 2.5  Consensus size: 18

         35 CAGCTGTTGT

                  *           
         45 AGCAGCGGCGACCACCGC
          1 AGCAGCAGCGACCACCGC

                              
         63 AGCAGCAGCGACCACCGC
          1 AGCAGCAGCGACCACCGC

                     
         81 AGCAGCAGC
          1 AGCAGCAGC

         90 TGGAGGACAA


Statistics
Matches: 26,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  18   26  1.00

ACGTcount: A:0.27, C:0.42, G:0.31, T:0.00


Consensus pattern (18 bp):   
AGCAGCAGCGACCACCGC

Done.