Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_39029

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 876

Length: 1461
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.26


Found at i:606 original size:3 final size:3

Alignment explanation


    Indices: 586--647  Score: 97
    Period size: 3  Copynumber: 20.7  Consensus size: 3

        576 TGATATTGAA

                  *       *                                                
        586 GAT GAA GAT GAG GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT
          1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT

                    *         
        634 GAT GAT TAT GAT GA
          1 GAT GAT GAT GAT GA

        648 GGAGTGGGTT


Statistics
Matches: 53,  Mismatches: 6, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
   3   53  1.00

ACGTcount: A:0.35, C:0.00, G:0.34, T:0.31


Consensus pattern (3 bp):   
GAT

Done.