Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_08861

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1740
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28


Found at i:223 original size:17 final size:17

Alignment explanation


    Indices: 201--239  Score: 53
    Period size: 17  Copynumber: 2.3  Consensus size: 17

        191 TCTCCGGTTG

                              
        201 TCTCCTCC-TCTTACTTT
          1 TCTCCTCCGT-TTACTTT

                             
        218 TCTCCTCCGTTTACTTT
          1 TCTCCTCCGTTTACTTT

            *    
        235 CCTCC
          1 TCTCC

        240 GCCTACCGCC


Statistics
Matches: 20,  Mismatches: 1, Indels: 2
        0.87            0.04        0.09

Matches are distributed among these distances:
  17   19  0.95
  18    1  0.05

ACGTcount: A:0.05, C:0.44, G:0.03, T:0.49


Consensus pattern (17 bp):   
TCTCCTCCGTTTACTTT
Done.