Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_24294

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 833

Length: 1389
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.27


Found at i:163 original size:12 final size:12

Alignment explanation


    Indices: 146--171  Score: 52
    Period size: 12  Copynumber: 2.2  Consensus size: 12

        136 AAAGGCGATC

                        
        146 CCAAGTCCAAGA
          1 CCAAGTCCAAGA

                        
        158 CCAAGTCCAAGA
          1 CCAAGTCCAAGA

              
        170 CC
          1 CC

        172 GGCGGTTCCT


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   14  1.00

ACGTcount: A:0.38, C:0.38, G:0.15, T:0.08


Consensus pattern (12 bp):   
CCAAGTCCAAGA
Done.