Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_07400

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2844
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.28


Found at i:1462 original size:21 final size:21

Alignment explanation


    Indices: 1407--1456  Score: 82
    Period size: 21  Copynumber: 2.4  Consensus size: 21

       1397 GTCCTAGTGT

                          *      
       1407 TTCTAGTGGAGGAACTTCAAG
          1 TTCTAGTGGAGGAAATTCAAG

                *                
       1428 TTCTGGTGGAGGAAATTCAAG
          1 TTCTAGTGGAGGAAATTCAAG

                    
       1449 TTCTAGTG
          1 TTCTAGTG

       1457 ATGGAAGCTC


Statistics
Matches: 26,  Mismatches: 3, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  21   26  1.00

ACGTcount: A:0.26, C:0.12, G:0.30, T:0.32


Consensus pattern (21 bp):   
TTCTAGTGGAGGAAATTCAAG
Done.