Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_03751

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3366
ACGTcount: A:0.26, C:0.25, G:0.22, T:0.27


Found at i:49 original size:6 final size:6

Alignment explanation


    Indices: 9--59  Score: 66
    Period size: 6  Copynumber: 8.5  Consensus size: 6

          1 ATGCTCTC

                *      *      *                                *   
          9 CTCCCT CTCCCT CTCCCT CTCCTT CTCCTT CTCCTT CTCCTT CTTCTT
          1 CTCCTT CTCCTT CTCCTT CTCCTT CTCCTT CTCCTT CTCCTT CTCCTT

               
         57 CTC
          1 CTC

         60 TTCGTTGTTG


Statistics
Matches: 42,  Mismatches: 3, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
   6   42  1.00

ACGTcount: A:0.00, C:0.55, G:0.00, T:0.45


Consensus pattern (6 bp):   
CTCCTT

Done.