Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_24761

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 741

Length: 1236
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.25


Found at i:92 original size:25 final size:24

Alignment explanation


    Indices: 35--92  Score: 57
    Period size: 25  Copynumber: 2.4  Consensus size: 24

         25 ATCCCTTCAC

                        *  *        
         35 TTCCTCTTCTCTTCCTCTTTACAT
          1 TTCCTCTTCTCTCCCACTTTACAT

                                       
         59 TT-CTGCTTCTACTCCCACTTCT-CAT
          1 TTCCT-CTTCT-CTCCCACTT-TACAT

                     
         84 TTCCTCTTC
          1 TTCCTCTTC

         93 CCCTGTTCAA


Statistics
Matches: 28,  Mismatches: 2, Indels: 7
        0.76            0.05        0.19

Matches are distributed among these distances:
  23    2  0.07
  24    7  0.25
  25   16  0.57
  26    3  0.11

ACGTcount: A:0.09, C:0.40, G:0.02, T:0.50


Consensus pattern (24 bp):   
TTCCTCTTCTCTCCCACTTTACAT
Done.