Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_03882

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 595

Length: 993
ACGTcount: A:0.32, C:0.25, G:0.24, T:0.19


Found at i:785 original size:18 final size:18

Alignment explanation


    Indices: 762--800  Score: 69
    Period size: 18  Copynumber: 2.2  Consensus size: 18

        752 CTGCTCCAGC

                              
        762 AAAGGACGCTAAAGATGG
          1 AAAGGACGCTAAAGATGG

                  *           
        780 AAAGGATGCTAAAGATGG
          1 AAAGGACGCTAAAGATGG

               
        798 AAA
          1 AAA

        801 AGACTCGAAA


Statistics
Matches: 20,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  18   20  1.00

ACGTcount: A:0.49, C:0.08, G:0.31, T:0.13


Consensus pattern (18 bp):   
AAAGGACGCTAAAGATGG
Done.