Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_39777

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 955

Length: 1593
ACGTcount: A:0.31, C:0.24, G:0.17, T:0.27


Found at i:31 original size:9 final size:9

Alignment explanation


    Indices: 17--47  Score: 62
    Period size: 9  Copynumber: 3.4  Consensus size: 9

          7 TACCCATTAT

                     
         17 ATGACTTCA
          1 ATGACTTCA

                     
         26 ATGACTTCA
          1 ATGACTTCA

                     
         35 ATGACTTCA
          1 ATGACTTCA

                
         44 ATGA
          1 ATGA

         48 TTTTGACTTT


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   22  1.00

ACGTcount: A:0.35, C:0.19, G:0.13, T:0.32


Consensus pattern (9 bp):   
ATGACTTCA
Done.