Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_38283

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 583

Length: 972
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.26


Found at i:701 original size:39 final size:39

Alignment explanation


    Indices: 630--709  Score: 108
    Period size: 39  Copynumber: 2.1  Consensus size: 39

        620 AACCGGTGGC

                    *                           *  
        630 GGTAGTAGTAGATGATGATGCAGAGGCCGTTCCCGAGCA
          1 GGTAGTAGCAGATGATGATGCAGAGGCCGTTCCCGAACA

                                *       *           
        669 GGTAGTAGCAGATGATGATGTAGCA-GCGGTTCCCGAACA
          1 GGTAGTAGCAGATGATGATGCAG-AGGCCGTTCCCGAACA

              
        708 GG
          1 GG

        710 AGGATGATAG


Statistics
Matches: 36,  Mismatches: 4, Indels: 2
        0.86            0.10        0.05

Matches are distributed among these distances:
  39   35  0.97
  40    1  0.03

ACGTcount: A:0.26, C:0.17, G:0.36, T:0.20


Consensus pattern (39 bp):   
GGTAGTAGCAGATGATGATGCAGAGGCCGTTCCCGAACA
Done.