Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_03067

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 658

Length: 1098
ACGTcount: A:0.22, C:0.30, G:0.21, T:0.27


Found at i:890 original size:6 final size:6

Alignment explanation


    Indices: 844--887  Score: 70
    Period size: 6  Copynumber: 7.3  Consensus size: 6

        834 ATCTTCCTCC

                                                 *      *      
        844 CCTTCA CCTTCA CCTTCA CCTTCA CCTTCA CCATCA CCATCA CC
          1 CCTTCA CCTTCA CCTTCA CCTTCA CCTTCA CCTTCA CCTTCA CC

        888 ATCGACGGCA


Statistics
Matches: 37,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
   6   37  1.00

ACGTcount: A:0.20, C:0.52, G:0.00, T:0.27


Consensus pattern (6 bp):   
CCTTCA
Done.