Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_20015

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2394
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.31


Found at i:775 original size:15 final size:15

Alignment explanation


    Indices: 755--784  Score: 51
    Period size: 15  Copynumber: 2.0  Consensus size: 15

        745 ATTGGGCCGG

                           
        755 TGCTTGATATAAATT
          1 TGCTTGATATAAATT

                      *    
        770 TGCTTGATATCAATT
          1 TGCTTGATATAAATT

        785 GTAGGCCTCA


Statistics
Matches: 14,  Mismatches: 1, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  15   14  1.00

ACGTcount: A:0.30, C:0.10, G:0.13, T:0.47


Consensus pattern (15 bp):   
TGCTTGATATAAATT
Done.