Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_08968

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3198
ACGTcount: A:0.33, C:0.16, G:0.26, T:0.25


Found at i:124 original size:21 final size:22

Alignment explanation


    Indices: 91--132  Score: 59
    Period size: 21  Copynumber: 2.0  Consensus size: 22

         81 AGATAAAGCA

                                  
         91 AGGGAAATAGAAGGAAAAGAGG
          1 AGGGAAATAGAAGGAAAAGAGG

                    *     *      
        113 AGGG-AATCGAAGGGAAAGAG
          1 AGGGAAATAGAAGGAAAAGAG

        133 ATCAAAAGTG


Statistics
Matches: 18,  Mismatches: 2, Indels: 1
        0.86            0.10        0.05

Matches are distributed among these distances:
  21   14  0.78
  22    4  0.22

ACGTcount: A:0.50, C:0.02, G:0.43, T:0.05


Consensus pattern (22 bp):   
AGGGAAATAGAAGGAAAAGAGG
Done.