Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_16817

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1910
ACGTcount: A:0.31, C:0.16, G:0.26, T:0.27


Found at i:1087 original size:18 final size:18

Alignment explanation


    Indices: 1066--1108  Score: 59
    Period size: 18  Copynumber: 2.4  Consensus size: 18

       1056 TCCGGTGAGA

                              
       1066 ATGATGAGGAGTTATCAG
          1 ATGATGAGGAGTTATCAG

                  **     *    
       1084 ATGATGCTGAGTTTTCAG
          1 ATGATGAGGAGTTATCAG

                   
       1102 ATGATGA
          1 ATGATGA

       1109 AAAGGAGGCC


Statistics
Matches: 21,  Mismatches: 4, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
  18   21  1.00

ACGTcount: A:0.30, C:0.07, G:0.30, T:0.33


Consensus pattern (18 bp):   
ATGATGAGGAGTTATCAG
Done.