Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_35208

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 459

Length: 765
ACGTcount: A:0.27, C:0.15, G:0.25, T:0.33


Found at i:428 original size:12 final size:12

Alignment explanation


    Indices: 411--444  Score: 52
    Period size: 12  Copynumber: 2.8  Consensus size: 12

        401 AGGACTCACC

                         
        411 TGATGATG-TCAA
          1 TGATGATGAT-AA

                        
        423 TGATGATGATAA
          1 TGATGATGATAA

                      
        435 TGATGATGAT
          1 TGATGATGAT

        445 GGGTGGGTTA


Statistics
Matches: 21,  Mismatches: 0, Indels: 2
        0.91            0.00        0.09

Matches are distributed among these distances:
  12   20  0.95
  13    1  0.05

ACGTcount: A:0.35, C:0.03, G:0.26, T:0.35


Consensus pattern (12 bp):   
TGATGATGATAA
Done.