Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_06738

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2802
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28


Found at i:1156 original size:42 final size:42

Alignment explanation


    Indices: 1104--1187  Score: 123
    Period size: 42  Copynumber: 2.0  Consensus size: 42

       1094 TTCCTCCAGA

                        *        *   *                
       1104 ACCTCCTGCCCCGATTAGAGCTAGTTCTCCTCCACCACCACC
          1 ACCTCCTGCCCCAATTAGAGCCAGTCCTCCTCCACCACCACC

                *                          *          
       1146 ACCTGCTGCCCCAATTAGAGCCAGTCCTCCTGCACCACCACC
          1 ACCTCCTGCCCCAATTAGAGCCAGTCCTCCTCCACCACCACC

       1188 CTCTATGAAA


Statistics
Matches: 37,  Mismatches: 5, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  42   37  1.00

ACGTcount: A:0.20, C:0.48, G:0.13, T:0.19


Consensus pattern (42 bp):   
ACCTCCTGCCCCAATTAGAGCCAGTCCTCCTCCACCACCACC

Done.