Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_23922

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 865

Length: 1443
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.31


Found at i:1284 original size:15 final size:15

Alignment explanation


    Indices: 1264--1298  Score: 61
    Period size: 15  Copynumber: 2.3  Consensus size: 15

       1254 TGAAGTTGAA

                           
       1264 GATGGTGACTATGAT
          1 GATGGTGACTATGAT

                    *      
       1279 GATGGTGATTATGAT
          1 GATGGTGACTATGAT

                 
       1294 GATGG
          1 GATGG

       1299 ATTTGAGAAT


Statistics
Matches: 19,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  15   19  1.00

ACGTcount: A:0.26, C:0.03, G:0.37, T:0.34


Consensus pattern (15 bp):   
GATGGTGACTATGAT
Done.