Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_30733

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 234

Length: 390
ACGTcount: A:0.20, C:0.18, G:0.39, T:0.22


Found at i:208 original size:6 final size:6

Alignment explanation


    Indices: 199--243  Score: 65
    Period size: 6  Copynumber: 7.7  Consensus size: 6

        189 ATTTGGGTTC

                 *                                  *            
        199 GGGTCT GGGTCA GGGTCA GGGTCA GGGTCA GGGTCG GGGTC- GGGT
          1 GGGTCA GGGTCA GGGTCA GGGTCA GGGTCA GGGTCA GGGTCA GGGT

        244 TCCGGGTATG


Statistics
Matches: 37,  Mismatches: 2, Indels: 1
        0.93            0.05        0.03

Matches are distributed among these distances:
   5    4  0.11
   6   33  0.89

ACGTcount: A:0.09, C:0.16, G:0.56, T:0.20


Consensus pattern (6 bp):   
GGGTCA

Done.