Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_04746

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2023
ACGTcount: A:0.29, C:0.19, G:0.16, T:0.36


Found at i:844 original size:21 final size:22

Alignment explanation


    Indices: 800--845  Score: 58
    Period size: 21  Copynumber: 2.1  Consensus size: 22

        790 CATATTTTAT

                               *   
        800 TATTTATATTATTTTTAAATACA
          1 TATTTATA-TATTTTTAAACACA

                            *     
        823 TATTTATA-ATTTTTATACACA
          1 TATTTATATATTTTTAAACACA

              
        844 TA
          1 TA

        846 CGTGTGTAAT


Statistics
Matches: 21,  Mismatches: 2, Indels: 2
        0.84            0.08        0.08

Matches are distributed among these distances:
  21   13  0.62
  23    8  0.38

ACGTcount: A:0.39, C:0.07, G:0.00, T:0.54


Consensus pattern (22 bp):   
TATTTATATATTTTTAAACACA
Done.