Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_26705

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 799

Length: 1332
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29


Found at i:184 original size:6 final size:6

Alignment explanation


    Indices: 173--203  Score: 62
    Period size: 6  Copynumber: 5.2  Consensus size: 6

        163 CTCCCTTCCT

                                                
        173 CCGCCA CCGCCA CCGCCA CCGCCA CCGCCA C
          1 CCGCCA CCGCCA CCGCCA CCGCCA CCGCCA C

        204 GGGCACCAAC


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   25  1.00

ACGTcount: A:0.16, C:0.68, G:0.16, T:0.00


Consensus pattern (6 bp):   
CCGCCA

Done.