Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_04943

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 547

Length: 912
ACGTcount: A:0.22, C:0.06, G:0.45, T:0.27


Found at i:180 original size:6 final size:6

Alignment explanation


    Indices: 169--212  Score: 52
    Period size: 6  Copynumber: 7.3  Consensus size: 6

        159 TTTCTTTGGT

                            *      *  *      *                 
        169 GGTGGA GGTGGA GGAGGA GGAGGT GGTGGG GGTGGA GGTGGA GG
          1 GGTGGA GGTGGA GGTGGA GGTGGA GGTGGA GGTGGA GGTGGA GG

        213 AGGTGGTGCT


Statistics
Matches: 33,  Mismatches: 5, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
   6   33  1.00

ACGTcount: A:0.16, C:0.00, G:0.70, T:0.14


Consensus pattern (6 bp):   
GGTGGA

Found at i:193 original size:24 final size:24

Alignment explanation


    Indices: 166--220  Score: 92
    Period size: 24  Copynumber: 2.3  Consensus size: 24

        156 TAGTTTCTTT

                                    
        166 GGTGGTGGAGGTGGAGGAGGAGGA
          1 GGTGGTGGAGGTGGAGGAGGAGGA

                    *        *      
        190 GGTGGTGGGGGTGGAGGTGGAGGA
          1 GGTGGTGGAGGTGGAGGAGGAGGA

                   
        214 GGTGGTG
          1 GGTGGTG

        221 CTTCAAGTAA


Statistics
Matches: 29,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  24   29  1.00

ACGTcount: A:0.15, C:0.00, G:0.69, T:0.16


Consensus pattern (24 bp):   
GGTGGTGGAGGTGGAGGAGGAGGA
Done.