Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_06837

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 626

Length: 1044
ACGTcount: A:0.31, C:0.19, G:0.17, T:0.33


Found at i:135 original size:15 final size:17

Alignment explanation


    Indices: 99--136  Score: 53
    Period size: 18  Copynumber: 2.3  Consensus size: 17

         89 TTTATTGCTC

                              
         99 TTTCATCAATGATCCACA
          1 TTTCATCAATGA-CCACA

                             
        117 TTTCATCAATG-CC-CA
          1 TTTCATCAATGACCACA

                 
        132 TTTCA
          1 TTTCA

        137 AAAACCATAC


Statistics
Matches: 20,  Mismatches: 0, Indels: 3
        0.87            0.00        0.13

Matches are distributed among these distances:
  15    7  0.35
  16    2  0.10
  18   11  0.55

ACGTcount: A:0.29, C:0.29, G:0.05, T:0.37


Consensus pattern (17 bp):   
TTTCATCAATGACCACA
Done.